RetrogeneDB ID: | retro_etel_1609 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_282723:3485..4481(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 97.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MATLKEQLIQNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSL |
MATLK.QLIQNLLKEEQAPQNK.TVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSL | |
Retrocopy | MATLKDQLIQNLLKEEQAPQNKLTVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSL |
Parental | FLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPV |
FLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLN..QRNVNIFKFIIPN.VKYSPNCKLLIVSNPV | |
Retrocopy | FLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLNSLQRNVNIFKFIIPNAVKYSPNCKLLIVSNPV |
Parental | DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS |
DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS | |
Retrocopy | DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS |
Parental | LKNLHPALGTDGDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGL |
LKNLHPALGTDGDKEQWKEVHKQVVESAYE.IKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGL | |
Retrocopy | LKNLHPALGTDGDKEQWKEVHKQVVESAYEEIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGL |
Parental | YGINEDVFLSVPCILGQNGISDVVKVTLTTEEEARLKKSADTLWGIQKELQF |
YGINEDVFLSVPCILGQNGISD.VKVTLT.EEEA.LKKSADTLWGIQKELQF | |
Retrocopy | YGINEDVFLSVPCILGQNGISDGVKVTLTPEEEA*LKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |