RetrogeneDB ID: | retro_etel_1439 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_265721:5454..6294(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 92.86 % |
Parental protein coverage: | 84.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIP |
VMEDKLKGEMMDLQHG.LFLRTPKIVSGKDY.VTA.SKLVIITAGA.QQEGESRLNLVQ.NVNIFKFIIP | |
Retrocopy | VMEDKLKGEMMDLQHGNLFLRTPKIVSGKDYNVTATSKLVIITAGAGQQEGESRLNLVQHNVNIFKFIIP |
Parental | NVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGE |
NVVK.SPNCKLL.VSN.VDILT.VAWKISGFPKN.VIGSGCNL.SARFRYLMG..LGVHPLSCHGWVLGE | |
Retrocopy | NVVKHSPNCKLLSVSNAVDILTDVAWKISGFPKNCVIGSGCNLNSARFRYLMGKKLGVHPLSCHGWVLGE |
Parental | HGDSSVPVWSGVNVAGVSLKNLHPALGTDGDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAES |
HGDSSVPVWSGVNVAGVSLKNLHPALGTD.DKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADL.ES | |
Retrocopy | HGDSSVPVWSGVNVAGVSLKNLHPALGTDEDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLGES |
Parental | IMKNLRRVHPISTMIKGLYGINEDVFLSVPCILGQNGISDVVKVTLTTEEEARLKKSADTLWGIQKELQF |
IMKNLRRVHPISTM.KGLYGIN.DVFLSVPCILGQNGISD.VK.TLT.EEEARLKKSADTLWGIQKELQF | |
Retrocopy | IMKNLRRVHPISTMMKGLYGIN*DVFLSVPCILGQNGISDIVKLTLTPEEEARLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |