RetrogeneDB ID: | retro_itri_337 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393284.1:20997293..20998085(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSSTOG00000019929 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 92.11 % |
Parental protein coverage: | 97.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR | |
Retrocopy | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI |
S.PRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVL.SITTEILKSVVARFDAG.LI | |
Retrocopy | S*PRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLLSITTEILKSVVARFDAGKLI |
Parental | TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAA |
TQRELVS.QVSDDLTE.AATFGLILDD.SLTHLTFGKEFTEAVE.KQVAQQEAERARFVVEKAEQQKKAA | |
Retrocopy | TQRELVSKQVSDDLTEQAATFGLILDDGSLTHLTFGKEFTEAVEPKQVAQQEAERARFVVEKAEQQKKAA |
Parental | IISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRTRNVTYLPAGQSV |
IISAEGDSK.AEL.ANSLATAGDGLIELRKLEA.E.IAYQLS.......LPA...V | |
Retrocopy | IISAEGDSKVAELVANSLATAGDGLIELRKLEATENIAYQLSLSEH--HLPANRAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |