RetrogeneDB ID: | retro_itri_945 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393347.1:4777467..4777948(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSSTOG00000019929 | ||
Aliases: | None | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 55.09 % |
Parental protein coverage: | 59.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | NVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVAR-FDAGELITQR |
N..VITG..DLQ.V.I.L.......ASQLP.IFTS..EDYDE..L.S.TT.I.KS.VA...D.G.LIT.R | |
Retrocopy | NMSVITGNRDLQIVSIILCVPLLVIASQLPPIFTSTQEDYDEYMLSSVTTDIFKSSVAH>LDTGQLITPR |
Parental | ELVSRQVSDDLTERAAT-FGLILDDVSLTHLTFG-KEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAI |
EL.S..VS.D.TE..AT.FG..LDDVSL..LT.G.K.F.EAVE..........R......KAEQQKKAAI | |
Retrocopy | ELISM*VSNDFTEPGAT<FGVHLDDVSLIFLTLG<KAFIEAVE--DTGDSAGVRSQIWNGKAEQQKKAAI |
Parental | ISAEGDSKAA-ELIANSLATAGDGLIE |
..A.G.SKA....I...LA.AGDGL.E | |
Retrocopy | NFAKGNSKAS<QPIPKLLAAAGDGLRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |