RetrogeneDB ID: | retro_mmus_1325 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:8718653..8718964(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSMUSG00000060938 | ||
Aliases: | Rpl26, SIG-20 | ||
Description: | ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022] |
Percent Identity: | 52.34 % |
Parental protein coverage: | 72.73 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | SKNRKRHFNAPS-HIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVVRGHY-KGQQIGKVVQVYRKKYVIY |
SK....HFN.P..H.R......PLS..L.QK.N..S.PI.K........Y.KG....K.VQ..RKK.V.Y | |
Retrocopy | SKSPEKHFNTPF<HTRWGVVPCPLSRDL*QKCNAHSPPILKNEVLAV*GY>KGP*SSKAVQIPRKKNVLY |
Parental | IERVQREKANGTTVHVGIHPSKVVITR-LKLDKDRKK |
I...Q.EK.NGTTVHVGIHP.KV..TR..KL.KDRKK | |
Retrocopy | IQ*EQQEKVNGTTVHVGIHPGKVAVTR<VKLEKDRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 82 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .77 RPM |
SRP007412_heart | 0 .00 RPM | 61 .58 RPM |
SRP007412_kidney | 0 .00 RPM | 56 .40 RPM |
SRP007412_liver | 0 .00 RPM | 60 .43 RPM |
SRP007412_testis | 0 .00 RPM | 61 .02 RPM |