RetrogeneDB ID: | retro_cjac_240 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:134830287..134830725(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000023074 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014372 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRS.P.RKDDEVQVVRGHY.GQQIGKV | |
Retrocopy | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSTPNRKDDEVQVVRGHYNGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
VQVYRKKYVIYIERVQ.EKANGTTVHVGIHPSK.VITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI | |
Retrocopy | VQVYRKKYVIYIERVQQEKANGTTVHVGIHPSKAVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
Parental | EKMQE |
EKMQE | |
Retrocopy | EKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .09 RPM | 46 .42 RPM |
SRP051959_heart | 0 .04 RPM | 67 .25 RPM |
SRP051959_kidney | 0 .04 RPM | 64 .67 RPM |
SRP051959_liver | 0 .06 RPM | 88 .83 RPM |
SRP051959_lung | 0 .03 RPM | 71 .76 RPM |
SRP051959_lymph_node | 0 .05 RPM | 91 .64 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 83 .75 RPM |
SRP051959_spleen | 0 .04 RPM | 97 .73 RPM |