RetrogeneDB ID: | retro_mmul_548 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:165190631..165191065(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000010479 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 95.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYK-GQQIGK |
MKFNPFVTSDRSKN.KRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVV.GHYK.GQQIGK | |
Retrocopy | MKFNPFVTSDRSKNHKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVQGHYK<GQQIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEET |
VVQVYRKKYVIYIE.VQREKANGTTVHVGIHPSKVV.TRLKLDKD.KKILERKAKSRQVGKEKGKY.EET | |
Retrocopy | VVQVYRKKYVIYIEWVQREKANGTTVHVGIHPSKVVLTRLKLDKDHKKILERKAKSRQVGKEKGKYEEET |
Parental | IEKMQE |
IEKMQE | |
Retrocopy | IEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .06 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .12 RPM | 70 .06 RPM |
SRP007412_testis | 0 .53 RPM | 20 .05 RPM |