RetrogeneDB ID: | retro_mmul_1773 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:71641795..71642256(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 69.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSK-NRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
MK..PF.TSD....N.K.HFNAPSHI.RKIMSSPL..EL..KYNVR.MP..KDDEVQ.V..HYKGQQIGK | |
Retrocopy | MKSSPFGTSD*NR<NCKKHFNAPSHICRKIMSSPLFEELDLKYNVRCMPM*KDDEVQIVQEHYKGQQIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQV-GKEKNTRKKQ |
VVQV.RK.YVI.IE.VQ.EKAN.TTVHVGI..SKVV.T.L.LD.D.KK...R...S.QV.GK....RKKQ | |
Retrocopy | VVQVHRKNYVICIE*VQQEKANSTTVHVGIYSSKVVVTGLTLDEDHKKDP*RESQSSQVAGKGGYIRKKQ |
Parental | LRRCRNKVILYKSFD |
.RRCRNKVILYK.F. | |
Retrocopy | *RRCRNKVILYKTFN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .00 RPM | 70 .06 RPM |
SRP007412_testis | 0 .00 RPM | 20 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3490 |