Parental gene:

ENSCJAG00000014372

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:73472318..73479322(+)


>ENSCJAG00000014372
ATGAAGTTCAATCCCTTTGTGACTTCCGACCGAAGCAAGAATCGCAAAAGGCATTTCAATGCACCTTCCCACATTCGCAG
GAAGATTATGTCCTCCCCTCTTTCCAAAGAGTTGAGACAGAAGTACAACGTGCGATCCATGCCCATCCGAAAGGATGATG
AAGTTCAGGTTGTACGAGGACACTATAAAGGTCAGCAGATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATACGTAATC
TACATTGAACGGGTGCAGCGGGAAAAGGCTAATGGCACAACTGTCCATGTAGGCATTCACCCCAGCAAGGTGGTTATCAC
TAGGCTAAAACTGGACAAAGACCGCAAAAAGATCCTTGAACGGAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGGGCA
AATACAAGGAAGAAACAATTGAGAAGATGCAGGAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 97 .73 RPM
SRP051959_skeletal_muscle 83 .75 RPM
SRP051959_lymph_node 91 .64 RPM
SRP051959_lung 71 .76 RPM
SRP051959_liver 88 .83 RPM
SRP051959_kidney 64 .67 RPM
SRP051959_heart 67 .25 RPM
SRP051959_colon 46 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002453 possible_ortholog 7 retrogenes
Bos taurus ENSBTAG00000012344 possible_ortholog 2 retrogenes
Choloepus hoffmanni ENSCHOG00000004703 possible_ortholog 10 retrogenes
Cavia porcellus ENSCPOG00000001315 possible_ortholog 10 retrogenes
Dasypus novemcinctus ENSDNOG00000002470 possible_ortholog 3 retrogenes
Equus caballus ENSECAG00000015757 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000011259 ortholog_one2one 13 retrogenes
Homo sapiens ENSG00000161970 possible_ortholog 27 retrogenes
Gorilla gorilla ENSGGOG00000023944 possible_ortholog 4 retrogenes
Macropus eugenii ENSMEUG00000009891 possible_ortholog 7 retrogenes
Myotis lucifugus ENSMLUG00000002176 possible_ortholog 1 retrogene
Macaca mulatta ENSMMUG00000003448 possible_ortholog 22 retrogenes
Monodelphis domestica ENSMODG00000006201 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000007988 possible_ortholog 12 retrogenes
Mus musculus ENSMUSG00000060938 possible_ortholog 21 retrogenes
Nomascus leucogenys ENSNLEG00000009981 possible_ortholog 1 retrogene
Oryctolagus cuniculus ENSOCUG00000006538 possible_ortholog 11 retrogenes
Otolemur garnettii ENSOGAG00000017070 possible_ortholog 3 retrogenes
Pan troglodytes ENSPTRG00000008742 possible_ortholog 3 retrogenes
Rattus norvegicus ENSRNOG00000004214 possible_ortholog 3 retrogenes
Sorex araneus ENSSARG00000005798 possible_ortholog 13 retrogenes
Sarcophilus harrisii ENSSHAG00000006890 possible_ortholog 1 retrogene
Sus scrofa ENSSSCG00000028850 possible_ortholog 9 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000021923 possible_ortholog 6 retrogenes
Tupaia belangeri ENSTBEG00000007749 possible_ortholog 53 retrogenes
Tarsius syrichta ENSTSYG00000001483 possible_ortholog 17 retrogenes
Vicugna pacos ENSVPAG00000000279 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_110 98.62 100.00
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2. retro_cjac_119 88.97 100.00
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3. retro_cjac_240 96.55 100.00
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4. retro_cjac_250 96.55 100.00
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5. retro_cjac_270 99.31 100.00
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6. retro_cjac_297 95.17 100.00
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7. retro_cjac_321 95.86 100.00
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8. retro_cjac_362 97.93 100.00
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Download FASTA sequences of all ENSCJAG00000014372 retrocopies