RetrogeneDB ID: | retro_mmul_1986 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:157127520..157127978(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKF.PFVTSDRSKNRKRHFNAPSH..RK..SS.LSK.LRQKY.V.SMPI..D.EVQVVRGHYKGQQ.GK. | |
Retrocopy | MKFSPFVTSDRSKNRKRHFNAPSHSHRKTLSSFLSKLLRQKYDV*SMPIQ*DYEVQVVRGHYKGQQLGKA |
Parental | VQV-YRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEK-NTRKKQ |
VQV.YRKKYVIY.E.VQ.EKANGTTVHVGIH.SKVVITRL.LDKD.KKILE.K.KSRQVGKEK..TRKKQ | |
Retrocopy | VQV<YRKKYVIYTEQVQWEKANGTTVHVGIHASKVVITRLNLDKDCKKILEKKVKSRQVGKEKGKTRKKQ |
Parental | LRRCRNKVILYKSF |
LRRCRNKVILY.SF | |
Retrocopy | LRRCRNKVILYRSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .12 RPM | 37 .91 RPM |
SRP007412_liver | 0 .00 RPM | 70 .06 RPM |
SRP007412_testis | 0 .08 RPM | 20 .05 RPM |