Parental gene:

MMU.9665, ENSMMUG00000003448

Aliases:None
Description:ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:16:8115472..8122239(-)


>ENSMMUG00000003448
ATGAAGTTTAATCCCTTTGTGACTTCCGACCGAAGCAAGAATCGCAAAAGGCATTTCAATGCACCTTCCCACATTCGCAG
GAAGATTATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTACAACGTGCGATCCATGCCCATCCGAAAGGATGATG
AAGTTCAGGTTGTACGAGGACACTATAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAGTATGTTATC
TACATTGAACGGGTGCAGCGGGAAAAGGCTAATGGCACAACGGTCCACGTAGGCATTCACCCCAGCAAGGTGGTTATCAC
TAGGCTAAAACTGGACAAAGACCGCAAAAAGATCCTTGAACGGAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGAATA
CAAGGAAGAAACAATTGAGAAGATGCAGGAATAAAGTAATCTTATATAAAAGCTTTGATTAA

Library Parental gene expression (RPM)
SRP007412_brain 33 .39 RPM
SRP007412_brain_prefrontal_cortex 118 .76 RPM
SRP007412_cerebellum 33 .90 RPM
SRP007412_heart 41 .57 RPM
SRP007412_kidney 37 .91 RPM
SRP007412_liver 70 .06 RPM
SRP007412_testis 20 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002453 possible_ortholog 7 retrogenes
retro_amel_1175, retro_amel_1535, retro_amel_1885, retro_amel_1934, retro_amel_360, retro_amel_499, retro_amel_900,
Bos taurus ENSBTAG00000012344 possible_ortholog 2 retrogenes
retro_btau_1090, retro_btau_230,
Choloepus hoffmanni ENSCHOG00000004703 ortholog_one2one 10 retrogenes
retro_chof_149, retro_chof_1893, retro_chof_2147, retro_chof_2276, retro_chof_2333, retro_chof_2383, retro_chof_244, retro_chof_312, retro_chof_816, retro_chof_942,
Callithrix jacchus ENSCJAG00000014372 possible_ortholog 8 retrogenes
retro_cjac_110, retro_cjac_119, retro_cjac_240, retro_cjac_250, retro_cjac_270, retro_cjac_297, retro_cjac_321, retro_cjac_362,
Cavia porcellus ENSCPOG00000001315 possible_ortholog 10 retrogenes
retro_cpor_1009, retro_cpor_1161, retro_cpor_1346, retro_cpor_1421, retro_cpor_1503, retro_cpor_1526, retro_cpor_167, retro_cpor_522, retro_cpor_585, retro_cpor_858,
Dasypus novemcinctus ENSDNOG00000002470 ortholog_one2one 3 retrogenes
retro_dnov_2054, retro_dnov_2174, retro_dnov_378,
Equus caballus ENSECAG00000015757 possible_ortholog 4 retrogenes
retro_ecab_429, retro_ecab_473, retro_ecab_515, retro_ecab_609,
Felis catus ENSFCAG00000011259 possible_ortholog 13 retrogenes
retro_fcat_1090, retro_fcat_1151, retro_fcat_1198, retro_fcat_1236, retro_fcat_1257, retro_fcat_1309, retro_fcat_1412, retro_fcat_1652, retro_fcat_1801, retro_fcat_1845, retro_fcat_1965, retro_fcat_497, retro_fcat_801,
Homo sapiens ENSG00000161970 possible_ortholog 27 retrogenes
retro_hsap_1137, retro_hsap_1309, retro_hsap_1376, retro_hsap_1394, retro_hsap_191, retro_hsap_2108, retro_hsap_2165, retro_hsap_2253, retro_hsap_253, retro_hsap_267, retro_hsap_2946, retro_hsap_3118, retro_hsap_3260, retro_hsap_3324, retro_hsap_3490, retro_hsap_3700, retro_hsap_3803, retro_hsap_3813, retro_hsap_3914, retro_hsap_4043, retro_hsap_4061, retro_hsap_4874, retro_hsap_4932, retro_hsap_642, retro_hsap_691, retro_hsap_915, retro_hsap_998,
Gorilla gorilla ENSGGOG00000023944 ortholog_one2one 4 retrogenes
retro_ggor_2565, retro_ggor_270, retro_ggor_51, retro_ggor_974,
Macropus eugenii ENSMEUG00000009891 possible_ortholog 7 retrogenes
retro_meug_1239, retro_meug_1538, retro_meug_1607, retro_meug_1827, retro_meug_262, retro_meug_322, retro_meug_534,
Myotis lucifugus ENSMLUG00000002176 possible_ortholog 1 retrogene
retro_mluc_232,
Macaca mulatta ENSMMUG00000003070 within_species_paralog 1 retrogene
retro_mmul_676,
Monodelphis domestica ENSMODG00000006201 possible_ortholog 2 retrogenes
retro_mdom_36, retro_mdom_64,
Mustela putorius furo ENSMPUG00000007988 possible_ortholog 12 retrogenes
retro_mputfur_1003, retro_mputfur_1146, retro_mputfur_1385, retro_mputfur_1428, retro_mputfur_1595, retro_mputfur_251, retro_mputfur_365, retro_mputfur_395, retro_mputfur_488, retro_mputfur_522, retro_mputfur_643, retro_mputfur_685,
Mus musculus ENSMUSG00000060938 possible_ortholog 21 retrogenes
retro_mmus_1325, retro_mmus_1444, retro_mmus_1506, retro_mmus_1642, retro_mmus_1866, retro_mmus_1978, retro_mmus_2011, retro_mmus_2218, retro_mmus_2435, retro_mmus_2540, retro_mmus_2673, retro_mmus_3078, retro_mmus_3174, retro_mmus_320, retro_mmus_3270, retro_mmus_3291, retro_mmus_3361, retro_mmus_384, retro_mmus_556, retro_mmus_900, retro_mmus_939,
Nomascus leucogenys ENSNLEG00000009981 possible_ortholog 1 retrogene
retro_nleu_76,
Oryctolagus cuniculus ENSOCUG00000006538 possible_ortholog 11 retrogenes
retro_ocun_1125, retro_ocun_1290, retro_ocun_1442, retro_ocun_1484, retro_ocun_1515, retro_ocun_1621, retro_ocun_1917, retro_ocun_529, retro_ocun_542, retro_ocun_589, retro_ocun_803,
Otolemur garnettii ENSOGAG00000017070 possible_ortholog 3 retrogenes
retro_ogar_118, retro_ogar_255, retro_ogar_66,
Sorex araneus ENSSARG00000005798 possible_ortholog 13 retrogenes
retro_sara_172, retro_sara_208, retro_sara_228, retro_sara_273, retro_sara_319, retro_sara_334, retro_sara_393, retro_sara_527, retro_sara_578, retro_sara_627, retro_sara_641, retro_sara_656, retro_sara_740,
Sarcophilus harrisii ENSSHAG00000006890 possible_ortholog 1 retrogene
retro_shar_458,
Sus scrofa ENSSSCG00000028850 possible_ortholog 9 retrogenes
retro_sscr_261, retro_sscr_363, retro_sscr_426, retro_sscr_427, retro_sscr_471, retro_sscr_485, retro_sscr_508, retro_sscr_609, retro_sscr_736,
Ictidomys tridecemlineatus ENSSTOG00000021923 possible_ortholog 6 retrogenes
retro_itri_1113, retro_itri_1145, retro_itri_1206, retro_itri_1262, retro_itri_1670, retro_itri_811,
Tupaia belangeri ENSTBEG00000007749 possible_ortholog 53 retrogenes
retro_tbel_1053, retro_tbel_1088, retro_tbel_1103, retro_tbel_1140, retro_tbel_1366, retro_tbel_1389, retro_tbel_1390, retro_tbel_1391, retro_tbel_1433, retro_tbel_1497, retro_tbel_1512, retro_tbel_1767, retro_tbel_1793, retro_tbel_1928, retro_tbel_1930, retro_tbel_2005, retro_tbel_2033, retro_tbel_2053, retro_tbel_2057, retro_tbel_2099, retro_tbel_2105, retro_tbel_2332, retro_tbel_2416, retro_tbel_2465, retro_tbel_2500, retro_tbel_268, retro_tbel_2727, retro_tbel_2778, retro_tbel_2806, retro_tbel_2884, retro_tbel_3020, retro_tbel_3187, retro_tbel_3300, retro_tbel_3332, retro_tbel_3704, retro_tbel_3711, retro_tbel_3790, retro_tbel_3964, retro_tbel_404, retro_tbel_4162, retro_tbel_4200, retro_tbel_4381, retro_tbel_4416, retro_tbel_446, retro_tbel_4480, retro_tbel_470, retro_tbel_474, retro_tbel_495, retro_tbel_573, retro_tbel_863, retro_tbel_906, retro_tbel_964, retro_tbel_99,
Tarsius syrichta ENSTSYG00000001483 possible_ortholog 17 retrogenes
retro_tsyr_1273, retro_tsyr_1274, retro_tsyr_1499, retro_tsyr_153, retro_tsyr_1705, retro_tsyr_1858, retro_tsyr_1869, retro_tsyr_2152, retro_tsyr_262, retro_tsyr_327, retro_tsyr_346, retro_tsyr_600, retro_tsyr_636, retro_tsyr_684, retro_tsyr_808, retro_tsyr_865, retro_tsyr_905,
Vicugna pacos ENSVPAG00000000279 possible_ortholog 4 retrogenes
retro_vpac_214, retro_vpac_255, retro_vpac_26, retro_vpac_357,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_325 90.34 100.00
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2. retro_mmul_360 53.72 79.08
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3. retro_mmul_398 64.47 99.31
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4. retro_mmul_405 70.13 99.35
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5. retro_mmul_448 84.25 100.00
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6. retro_mmul_548 95.21 100.00
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7. retro_mmul_805 89.66 100.00
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8. retro_mmul_903 70.14 99.31
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9. retro_mmul_920 96.55 100.00
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10. retro_mmul_992 84.51 97.24
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11. retro_mmul_1117 76.35 100.00
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12. retro_mmul_1361 82.19 100.00
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13. retro_mmul_1398 97.78 93.10
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14. retro_mmul_1497 89.66 100.00
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15. retro_mmul_1710 83.33 77.78
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16. retro_mmul_1773 69.03 100.00
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17. retro_mmul_1899 98.62 100.00
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18. retro_mmul_1986 83.12 99.35
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19. retro_mmul_2052 80.92 90.34
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20. retro_mmul_2163 64.80 81.05
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21. retro_mmul_2332 71.05 77.93
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22. retro_mmul_2344 67.54 77.93
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Download FASTA sequences of all ENSMMUG00000003448 retrocopies