RetrogeneDB ID: | retro_mmul_1361 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 18:70280440..70280873(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000032495 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 82.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKI-MSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
MKFNPFVTSD.SKN.KRHFNAPSHI.RKI..SS.LSKELR.KYNV.SMPI.KDD.VQV..GHYKGQQ.GK | |
Retrocopy | MKFNPFVTSDQSKNHKRHFNAPSHIHRKI>LSSLLSKELRDKYNVQSMPIGKDD-VQVIQGHYKGQQTGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEET |
VVQVYRKKYV.Y.ERVQREKANGTTV.VGIHPSKVV..R.KLD.D.KKIL.RKA.SRQV.K.KGKYKEET | |
Retrocopy | VVQVYRKKYVLYTERVQREKANGTTVRVGIHPSKVVLARPKLDTDHKKILVRKATSRQVEK*KGKYKEET |
Parental | IEKMQE |
IE.MQE | |
Retrocopy | IE*MQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .19 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .12 RPM | 37 .91 RPM |
SRP007412_liver | 0 .04 RPM | 70 .06 RPM |
SRP007412_testis | 0 .11 RPM | 20 .05 RPM |