RetrogeneDB ID: | retro_ggor_2565 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:155320357..155320812(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000161970 | ||
Ensembl ID: | ENSGGOG00000023944 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.89 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPF.TSDR.KN.KRHFNAPSHI.RKIMSSPLSKELRQKYNV.SMPIRKDDEVQVVRGHYKGQ.IG.V | |
Retrocopy | MKFNPFATSDRNKNHKRHFNAPSHIYRKIMSSPLSKELRQKYNV*SMPIRKDDEVQVVRGHYKGQPIGRV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVG-KEKNTRKKPL |
VQVYRKKYV.Y.ERVQ.EKANGTTVHVGIHPSK.VITRLKLD.DRKKILE.KAKSRQVG.K..NTRKK.L | |
Retrocopy | VQVYRKKYVLYVERVQWEKANGTTVHVGIHPSKAVITRLKLDTDRKKILEQKAKSRQVG<KRANTRKKQL |
Parental | RRCRNKVILYTSF |
RRCRNKVILYTSF | |
Retrocopy | RRCRNKVILYTSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 27 .00 RPM |
SRP007412_cerebellum | 0 .20 RPM | 34 .39 RPM |
SRP007412_heart | 0 .00 RPM | 14 .35 RPM |
SRP007412_kidney | 0 .08 RPM | 78 .02 RPM |
SRP007412_liver | 0 .03 RPM | 74 .83 RPM |
SRP007412_testis | 0 .00 RPM | 44 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3813 |