RetrogeneDB ID: | retro_mmul_398 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:100631717..100632151(+) | ||
Located in intron of: | ENSMMUG00000020726 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 64.47 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | KFNPFVTSDRSK-NRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
KFN.FVTSD..K...K...N..SH....IMSSPLSKELR.K.NV..MPI.KDDEVQVV.GH.K.QQIGKV | |
Retrocopy | KFNSFVTSDSKK>SHKKKVNTLSHVHTTIMSSPLSKELRKKHNV*PMPI*KDDEVQVV*GH*KVQQIGKV |
Parental | VQV-YRKKYVIYIERVQR-EK--ANGTTVHVGIHP-SKVVIT-RLKLDKDRK-KILERKAKSRQVGKEKG |
VQV.YRK..VIY.ERVQ..EK...N.TT...GI...SKV.I..RL...K..K.KILE.KAKS.QVGKEK. | |
Retrocopy | VQV<YRKI*VIYTERVQQ<EKDWTNRTTIGMGIAS<SKVAIL<RLEVNKTHK<KILEWKAKSHQVGKEKD |
Parental | KYKEETIEKMQE |
K.KEETIE..QE | |
Retrocopy | KHKEETIEMVQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .04 RPM | 70 .06 RPM |
SRP007412_testis | 0 .04 RPM | 20 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_191 |
Gorilla gorilla | retro_ggor_270 |