RetrogeneDB ID: | retro_mmul_2344 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:60748150..60748488(-) | ||
Located in intron of: | ENSMMUG00000011433 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 67.54 % |
Parental protein coverage: | 77.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPS |
P.SKEL.QKYNVRS..I.KDD.VQ.V.GHYK.QQ.GK.VQV.RKK.V.Y.E.VQ.EKANGTTVH.GIH.S | |
Retrocopy | PVSKELTQKYNVRSTLI*KDDGVQAV*GHYKCQQTGKAVQVNRKKCVTYTEQVQWEKANGTTVHIGIHSS |
Parental | KV-VITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE |
K.....RLK...D..KIL..KAKS.Q.GK.KGK.KEET.EKMQ. | |
Retrocopy | KL<LTSRLKVNRDQRKILGQKAKSHQAGKRKGKHKEETTEKMQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .06 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .00 RPM | 70 .06 RPM |
SRP007412_testis | 0 .04 RPM | 20 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4061 |