RetrogeneDB ID: | retro_mmul_360 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:27201486..27201849(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 53.72 % |
Parental protein coverage: | 79.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | DRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYV |
D..KN.KR..NA.SHI..KIMSSPLSKELRQKYNVRSMPI.K..E.Q.....Y.GQQI.KVVQVY.KKYV | |
Retrocopy | DSHKNHKRYCNAASHIYGKIMSSPLSKELRQKYNVRSMPI*KHEEAQFAQAPYRGQQISKVVQVYGKKYV |
Parental | IYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGK |
I.I..VQ.EKA............K..I...K.......I...K.K....GK | |
Retrocopy | ICIGHVQGEKAGHSPQQGA*P*AKTEILEQKAKSHQVGIEKPKYKENAIGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .90 RPM |
SRP007412_heart | 0 .00 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .51 RPM | 70 .06 RPM |
SRP007412_testis | 0 .00 RPM | 20 .05 RPM |