RetrogeneDB ID: | retro_mmus_2540 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:3236430..3236865(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000062353 | |
Aliases: | Gm15772, ENSMUSG00000062353, OTTMUSG00000026108 | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSMUSG00000060938 | ||
Aliases: | Rpl26, SIG-20 | ||
Description: | ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV | |
Retrocopy | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI | |
Retrocopy | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
Parental | EKMQE |
EKMQE | |
Retrocopy | EKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 2 .24 RPM | 82 .07 RPM |
SRP007412_cerebellum | 8 .55 RPM | 43 .77 RPM |
SRP007412_heart | 0 .06 RPM | 61 .58 RPM |
SRP007412_kidney | 7 .49 RPM | 56 .40 RPM |
SRP007412_liver | 5 .46 RPM | 60 .43 RPM |
SRP007412_testis | 13 .49 RPM | 61 .02 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_113392 | 305 libraries | 361 libraries | 374 libraries | 27 libraries | 5 libraries |