RetrogeneDB ID: | retro_mmus_3174 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:11714814..11715239(-) | ||
Located in intron of: | ENSMUSG00000031510 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSMUSG00000060938 | ||
Aliases: | Rpl26, SIG-20 | ||
Description: | ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022] |
Percent Identity: | 86.81 % |
Parental protein coverage: | 97.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSK-NRKRHFNAPSHIRRKIMSS-PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIG |
MKFNPFVTSDRSK.N.KRH.NAPSHI.R....S.PL..ELRQKYN.RSMPIRKDDEVQ.V.GHYKGQQIG | |
Retrocopy | MKFNPFVTSDRSK>NCKRHVNAPSHI-RRKITS>PLFPELRQKYNFRSMPIRKDDEVQFVQGHYKGQQIG |
Parental | KVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEE |
KVVQVYRKKYVIYIERVQREKAN.TTVHVGIHPSKVVITRLKLDKD.KKILERKA.SRQVGKEKGKYKEE | |
Retrocopy | KVVQVYRKKYVIYIERVQREKANSTTVHVGIHPSKVVITRLKLDKDCKKILERKAESRQVGKEKGKYKEE |
Parental | TIEK |
TI.. | |
Retrocopy | TIDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 82 .07 RPM |
SRP007412_cerebellum | 0 .04 RPM | 43 .77 RPM |
SRP007412_heart | 0 .03 RPM | 61 .58 RPM |
SRP007412_kidney | 0 .06 RPM | 56 .40 RPM |
SRP007412_liver | 0 .11 RPM | 60 .43 RPM |
SRP007412_testis | 0 .09 RPM | 61 .02 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_139291 | 191 libraries | 443 libraries | 414 libraries | 19 libraries | 5 libraries |