RetrogeneDB ID: | retro_ggor_974 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:6484738..6485064(-) | ||
Located in intron of: | ENSGGOG00000001316 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000161970 | ||
Ensembl ID: | ENSGGOG00000023944 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.13 % |
Parental protein coverage: | 71.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | VRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQR-EKANGTTVHVGIHPS-KVVITRLKL |
V.SMPI.KD.EV.V...HY.GQQIGK.V.V.RKK...Y.E...R.E.A.G.TV.V...PS....ITRLKL | |
Retrocopy | VPSMPIQKDEEVEVAQRHYTGQQIGKAVRVCRKKCATYTEQEHR<EEAKGRTV-VCTSPS<HMAITRLKL |
Parental | DKDRK-KILERKAKSRQVGKE--KNTRKKPLRRCRNKV-ILYTSF |
DKD.K.KILE.KAK......E...N..KK.LRRCRNKV.ILYT.F | |
Retrocopy | DKDHK<KILEWKAKQIFLSREGRANIKKKQLRRCRNKV<ILYTTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 27 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 34 .39 RPM |
SRP007412_heart | 0 .00 RPM | 14 .35 RPM |
SRP007412_kidney | 0 .00 RPM | 78 .02 RPM |
SRP007412_liver | 0 .00 RPM | 74 .83 RPM |
SRP007412_testis | 0 .00 RPM | 44 .34 RPM |