RetrogeneDB ID: | retro_mmus_556 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:43639228..43639613(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl26 | ||
Ensembl ID: | ENSMUSG00000060938 | ||
Aliases: | Rpl26, SIG-20 | ||
Description: | ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022] |
Percent Identity: | 65.19 % |
Parental protein coverage: | 90.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | FNPFVTSDRSKNRKRHFNAPSHIRRKIMSSP-LSKELRQKYNVRSMPIR-KDDEVQVVRGHYKGQQIGKV |
FNPFVT.D..KN...HFN.PSHI..KI..SP.LS.E.RQKY.V.S.P...KDDEVQVV.GH..G.QIGK. | |
Retrocopy | FNPFVTCDQVKNCTQHFNVPSHIWTKILPSP<LSREPRQKYTVPSVPTE<KDDEVQVVQGHHEGLQIGKA |
Parental | VQVYRKKYVIYIERVQ-REKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ-VGKEKG |
..V.RKK.VI.IE.VQ.REKAN.TTVH.GI.PSK..ITRLKLD...K.ILE...KS.Q..GKEKG | |
Retrocopy | SRVSRKKHVISIEQVQ>REKANVTTVHMGIRPSKAAITRLKLD--HKMILE*EVKSQQ<IGKEKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 82 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .77 RPM |
SRP007412_heart | 0 .00 RPM | 61 .58 RPM |
SRP007412_kidney | 0 .00 RPM | 56 .40 RPM |
SRP007412_liver | 0 .00 RPM | 60 .43 RPM |
SRP007412_testis | 0 .00 RPM | 61 .02 RPM |