RetrogeneDB ID: | retro_mmul_920 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:59545126..59545561(+) | ||
Located in intron of: | ENSMMUG00000005622 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9665 | ||
Ensembl ID: | ENSMMUG00000003448 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:RefSeq peptide;Acc:NP_001180495] |
Percent Identity: | 96.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTS..SKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV | |
Retrocopy | MKFNPFVTSN*SKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
VQVYRKKYVI..ERVQREKANGTTVHVGIHPSKVVITRLKL.KDRKKILERKAKSRQVGKEKGKYKEETI | |
Retrocopy | VQVYRKKYVINTERVQREKANGTTVHVGIHPSKVVITRLKLHKDRKKILERKAKSRQVGKEKGKYKEETI |
Parental | EKMQE |
EKMQE | |
Retrocopy | EKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 118 .76 RPM |
SRP007412_cerebellum | 0 .06 RPM | 33 .90 RPM |
SRP007412_heart | 0 .18 RPM | 41 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .91 RPM |
SRP007412_liver | 0 .00 RPM | 70 .06 RPM |
SRP007412_testis | 0 .08 RPM | 20 .05 RPM |