RetrogeneDB ID: | retro_mmus_1441 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:16968608..16969068(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps27a | ||
Ensembl ID: | ENSMUSG00000020460 | ||
Aliases: | Rps27a, 0610006J14Rik, Uba52, Ubb, Ubc | ||
Description: | ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544] |
Percent Identity: | 72.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTL.GKTITLEVEP.DTIENVKAKIQDKEG.PPDQQRL.FAGKQLEDG.TLSDYNIQ.ESTLHLV | |
Retrocopy | MQIFVKTLMGKTITLEVEPLDTIENVKAKIQDKEGLPPDQQRLVFAGKQLEDGHTLSDYNIQRESTLHLV |
Parental | LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYK-VDENGK-ISRLRRECPSDECGAGVFMGSHFDR |
L.L.GGA...KK.........K....K.K...L...K.VDENG..IS....ECPSDECGAGV.MGSHFDR | |
Retrocopy | LSLLGGA---KKRKKKSYTTPKKSKHKRKKVKLALLK>VDENGQ<IS*PHPECPSDECGAGVIMGSHFDR |
Parental | HYCGKCCLT-YCFNKPEDK |
H.CGKCCLT..CFNKPE.K | |
Retrocopy | HCCGKCCLT>NCFNKPEGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .27 RPM |
SRP007412_heart | 0 .00 RPM | 37 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 40 .75 RPM |
SRP007412_liver | 0 .00 RPM | 49 .78 RPM |
SRP007412_testis | 0 .00 RPM | 26 .89 RPM |