RetrogeneDB ID: | retro_mmus_3234 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:111309692..111310127(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps27a | ||
Ensembl ID: | ENSMUSG00000020460 | ||
Aliases: | Rps27a, 0610006J14Rik, Uba52, Ubb, Ubc | ||
Description: | ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544] |
Percent Identity: | 97.24 % |
Parental protein coverage: | 92.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRK |
TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK.RK | |
Retrocopy | TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKRRK |
Parental | KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFN |
KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLR.ECPSDECGAGVFMGSH.DRHY.GKCCLTYCFN | |
Retrocopy | KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLR*ECPSDECGAGVFMGSHLDRHYYGKCCLTYCFN |
Parental | KPEDK |
KPEDK | |
Retrocopy | KPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 54 .37 RPM |
SRP007412_cerebellum | 0 .04 RPM | 28 .27 RPM |
SRP007412_heart | 0 .03 RPM | 37 .01 RPM |
SRP007412_kidney | 0 .29 RPM | 40 .75 RPM |
SRP007412_liver | 0 .05 RPM | 49 .78 RPM |
SRP007412_testis | 0 .09 RPM | 26 .89 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_139071 | 94 libraries | 163 libraries | 508 libraries | 172 libraries | 135 libraries |