RetrogeneDB ID:

retro_meug_209

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:GeneScaffold_6226:49178..49496(-)
Located in intron of:ENSMEUG00000016609
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS27A
Ensembl ID:ENSMEUG00000008917
Aliases:None
Description:ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]


Retrocopy-Parental alignment summary:






>retro_meug_209
CAAGCAACTGAAAGAAGTACTTTGTCTGACTATAATATTCAGAAGGAGTCTACCCTTCATCTTGTTCTGAGGATTCATGG
TGGTGACAAAAAGAAGAAGAAGTCTTACACCACTCCCAAAAAGAACAAGCATAAGAAAAAGAAGACTAAGCTTGCTGTTC
TGAAGAACGGTAAGCTGGATAAGAATGGCAAAACTAGCCATCTTTGATGAGAGGGCCCTTCTGATGAATGTGGTACTGTA
GTCTTTATGGCTAGTCATTTTGACAGACGTAATTGTGGCAAGTGTTGTCTAACCTACCACTGCAACAAGCCAGAAGAC

ORF - retro_meug_209 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.7 %
Parental protein coverage: 68.59 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLR
Q.....TLSDYNIQKESTLHLVLR..GG.KK.KKKSYTTPKKNKHK.KK.KLAVLK..K.D.NGK.S.L.
RetrocopyQATERSTLSDYNIQKESTLHLVLRIHGGDKK-KKKSYTTPKKNKHKKKKTKLAVLKNGKLDKNGKTSHL*
ParentalRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPED
.E.PSDECG..VFMASHFDR..CGKCCLTY..NKPED
Retrocopy*EGPSDECGTVVFMASHFDRRNCGKCCLTYHCNKPED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_209 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_209 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 120 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000040175 retrocopies
Canis familiaris ENSCAFG000000234713 retrocopies
Callithrix jacchus ENSCJAG000000100525 retrocopies
Felis catus ENSFCAG000000239391 retrocopy
Homo sapiens ENSG0000014394710 retrocopies
Gorilla gorilla ENSGGOG000000076789 retrocopies
Loxodonta africana ENSLAFG000000231332 retrocopies
Macropus eugenii ENSMEUG00000008917 13 retrocopies
Myotis lucifugus ENSMLUG0000001706410 retrocopies
Myotis lucifugus ENSMLUG000000294491 retrocopy
Macaca mulatta ENSMMUG000000155638 retrocopies
Monodelphis domestica ENSMODG000000018193 retrocopies
Mustela putorius furoENSMPUG000000104686 retrocopies
Mus musculus ENSMUSG0000002046019 retrocopies
Oryctolagus cuniculus ENSOCUG0000000361310 retrocopies
Pongo abelii ENSPPYG000000258711 retrocopy
Pan troglodytes ENSPTRG000000119281 retrocopy
Rattus norvegicus ENSRNOG000000044262 retrocopies
Sus scrofa ENSSSCG000000223571 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000095665 retrocopies
Tursiops truncatus ENSTTRG000000139475 retrocopies



Copyright © RetrogeneDB 2014-2017