RetrogeneDB ID: | retro_mmus_2043 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:69737359..69737752(-) | ||
Located in intron of: | ENSMUSG00000042133 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082345 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps27a | ||
Ensembl ID: | ENSMUSG00000020460 | ||
Aliases: | Rps27a, 0610006J14Rik, Uba52, Ubb, Ubc | ||
Description: | ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 84.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR-GGAKKRKKKSYTTPKKNKH |
.V.AKIQDKEGIPPDQQRLIFAGKQLEDGR.LSDYNI.KESTLHLVLRLR.GGAK.RKK.SYTTPKK.KH | |
Retrocopy | HVTAKIQDKEGIPPDQQRLIFAGKQLEDGRALSDYNIPKESTLHLVLRLR<GGAKRRKK-SYTTPKKSKH |
Parental | KRKKVKLAVLKYYKVDENGKI-SRLRRE-CPSDECGAGVFMGSHFDRHYCGKCCLT-YCFNKPEDK |
KRKK.KLAVLKYYK.D.N.KI.SRLRRE.CPS.ECGAGVFMGSHFDRHYCGKCCLT..CFNKPEDK | |
Retrocopy | KRKKSKLAVLKYYKADQNVKI<SRLRRE>CPSVECGAGVFMGSHFDRHYCGKCCLT>NCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 54 .37 RPM |
SRP007412_cerebellum | 0 .13 RPM | 28 .27 RPM |
SRP007412_heart | 0 .03 RPM | 37 .01 RPM |
SRP007412_kidney | 0 .10 RPM | 40 .75 RPM |
SRP007412_liver | 0 .00 RPM | 49 .78 RPM |
SRP007412_testis | 0 .18 RPM | 26 .89 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_88432 | 56 libraries | 66 libraries | 599 libraries | 260 libraries | 91 libraries |