Parental gene: | Rps27a, ENSMUSG00000020460 |
| Aliases: | Rps27a, 0610006J14Rik, Uba52, Ubb, Ubc |
| Description: | ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 11:29545845..29548109(-) |
>ENSMUSG00000020460
ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAA
GGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCC
GGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAAAAGG
AAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATAAGAGGAAGAAGGTTAAGTTGGCTGTGCTGAAATACTATAA
GGTGGATGAAAATGGCAAAATTAGCCGACTTCGTCGAGAGTGTCCTTCTGATGAATGTGGTGCTGGAGTTTTCATGGGAA
GCCACTTTGACAGGCATTACTGTGGCAAGTGTTGTCTGACTTACTGCTTCAACAAACCAGAAGACAAGTAG
ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAA
GGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCC
GGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGTGCTAAGAAAAGG
AAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATAAGAGGAAGAAGGTTAAGTTGGCTGTGCTGAAATACTATAA
GGTGGATGAAAATGGCAAAATTAGCCGACTTCGTCGAGAGTGTCCTTCTGATGAATGTGGTGCTGGAGTTTTCATGGGAA
GCCACTTTGACAGGCATTACTGTGGCAAGTGTTGTCTGACTTACTGCTTCAACAAACCAGAAGACAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 54 .37 RPM |
| SRP007412_cerebellum | 28 .27 RPM |
| SRP007412_heart | 37 .01 RPM |
| SRP007412_kidney | 40 .75 RPM |
| SRP007412_liver | 49 .78 RPM |
| SRP007412_testis | 26 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004017 | possible_ortholog | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000023471 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010052 | possible_ortholog | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000023133 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000008917 | ortholog_one2one | 13 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017064 | possible_ortholog | 10 retrogenes | |
| Myotis lucifugus | ENSMLUG00000029449 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015563 | possible_ortholog | 8 retrogenes | |
| Monodelphis domestica | ENSMODG00000001819 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003613 | possible_ortholog | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000025871 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000011928 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004426 | ortholog_one2many | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000009566 | possible_ortholog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_306 | 91.59 | 68.59 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_318 | 81.08 | 93.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1074 | 91.08 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_1268 | 93.59 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_1440 | 66.88 | 99.36 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmus_1441 | 72.96 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_mmus_1815 | 91.67 | 98.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_mmus_1917 | 59.33 | 93.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_mmus_2043 | 87.50 | 84.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_mmus_2092 | 65.88 | 52.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_mmus_2098 | 91.53 | 75.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_mmus_2449 | 78.63 | 83.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_mmus_2514 | 95.51 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_mmus_2785 | 99.36 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_mmus_2801 | 93.91 | 73.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_mmus_2931 | 94.23 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_mmus_3234 | 97.24 | 92.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_mmus_3292 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 19. | retro_mmus_3391 | 99.36 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000020460 retrocopies