RetrogeneDB ID: | retro_pcap_170 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_133035:990..1316(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSPCAG00000010744 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 88.29 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRL |
S.LEKFLIP.ASQAESKVFYLKMK.DYYRYLAEVAA.DDKKGIVDQS.QAYQEAFEISKKEMQP.HP.RL | |
Retrocopy | SFLEKFLIPDASQAESKVFYLKMKRDYYRYLAEVAAADDKKGIVDQS-QAYQEAFEISKKEMQPMHPTRL |
Parental | GLALNFSVFYYEILNS-PEKACSLAKTAFDEAIAELDTLSE |
GLALNFSV.YY.ILNS.PEKAC.LA.TAFDEAI.ELDTLSE | |
Retrocopy | GLALNFSVLYYVILNS<PEKACCLAATAFDEAITELDTLSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000008694 | 2 retrocopies | |
Bos taurus | ENSBTAG00000000236 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000000580 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000015844 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000001672 | 10 retrocopies | |
Ficedula albicollis | ENSFALG00000005860 | 1 retrocopy | |
Felis catus | ENSFCAG00000032017 | 4 retrocopies | |
Gallus gallus | ENSGALG00000010725 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022133 | 9 retrocopies | |
Mus musculus | ENSMUSG00000022285 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000734 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000010744 | 1 retrocopy |
retro_pcap_170 ,
|
Pongo abelii | ENSPPYG00000018791 | 7 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000003703 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012671 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000006062 | 2 retrocopies | |
Taeniopygia guttata | ENSTGUG00000012078 | 1 retrocopy |