RetrogeneDB ID:

retro_ggor_2379

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:127858492..127859011(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:YWHAZ
Ensembl ID:ENSGGOG00000022133
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2379
CCAGTCATGGAAAAAATGAGCTGGTTCAGAAGGCTGAACTGGCCCAGTAGGCTGAGAGATATGATGACATCGCAGCCTGC
ATGAAATCTGTAACTGAGCAAGGAGCTGAAATTATCCAATGAGGAGAGGAACCTTCTCTCAGTTGCTTCTAAAAATGTAG
GAGCCTATAGGTCATCTTGGAGTGTTGTCTCAAGTATTGAACAAAAGACGGAAGGTGCTGAGAAAAAACAGCAGATGGCT
CGAGAATACAGAGAGAAAATTCAGACAGAGCTAAGAGATATCTGCAACGATGTACTGTCTCTTTTGGAAAAGTACTTGAT
CCCCAGTGCTTCACAAGCAGAGAGCAAAGTCTTCTATTTGAAAATGAAAGGAGATTACTACTGTTACTTGGCTCAGGTTG
TTGCTGGTGATGACAAGAAAGGGATTGTGGATCAGTCACAACAAGCATACCAAGAAGCTTTTGAAAGCAGCAAAAAGGAA
ATGCAACCAACACATCCTATCAGACTGGATTTACTCCTC

ORF - retro_ggor_2379 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.64 %
Parental protein coverage: 70.45 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalPVMDK-NELVQKAKLAEQAERYDDMAACMKSVTEQGAE-LSNEERNLLSVAYKNVVGARRSSWRVVSSIE
PVM.K.NELVQKA.LA..AERYDD.AACMKSVTEQGAE.LSNEERNLLSVA.KNV.GA.RSSW.VVSSIE
RetrocopyPVMEK<NELVQKAELAQ*AERYDDIAACMKSVTEQGAE>LSNEERNLLSVASKNV-GAYRSSWSVVSSIE
ParentalQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGD
QKTEGAEKKQQMAREYREKI.TELRDICNDVLSLLEK.LIP.ASQAESKVFYLKMKGDYY.YLA.V.AGD
RetrocopyQKTEGAEKKQQMAREYREKIQTELRDICNDVLSLLEKYLIPSASQAESKVFYLKMKGDYYCYLAQVVAGD
ParentalDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLAL
DKKGIVDQSQQAYQEAFE.SKKEMQPTHPIRL.L.L
RetrocopyDKKGIVDQSQQAYQEAFESSKKEMQPTHPIRLDLLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .19 RPM 142 .38 RPM
SRP007412_cerebellum 0 .00 RPM 46 .69 RPM
SRP007412_heart 0 .00 RPM 7 .79 RPM
SRP007412_kidney 0 .00 RPM 46 .49 RPM
SRP007412_liver 0 .00 RPM 20 .34 RPM
SRP007412_testis 0 .00 RPM 87 .44 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2379 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2379 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 37 parental genes, and 137 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000086942 retrocopies
Ailuropoda melanoleuca ENSAMEG000000003281 retrocopy
Bos taurus ENSBTAG000000002364 retrocopies
Canis familiaris ENSCAFG000000005806 retrocopies
Choloepus hoffmanni ENSCHOG000000027989 retrocopies
Callithrix jacchus ENSCJAG000000158445 retrocopies
Cavia porcellus ENSCPOG000000202855 retrocopies
Dasypus novemcinctus ENSDNOG0000000167210 retrocopies
Equus caballus ENSECAG000000218823 retrocopies
Ficedula albicollis ENSFALG000000058601 retrocopy
Felis catus ENSFCAG000000320174 retrocopies
Homo sapiens ENSG000001649241 retrocopy
Gallus gallus ENSGALG000000107251 retrocopy
Gorilla gorilla ENSGGOG000000015691 retrocopy
Gorilla gorilla ENSGGOG000000045802 retrocopies
Gorilla gorilla ENSGGOG000000168401 retrocopy
Gorilla gorilla ENSGGOG00000022133 9 retrocopies
Loxodonta africana ENSLAFG000000049442 retrocopies
Myotis lucifugus ENSMLUG000000173233 retrocopies
Macaca mulatta ENSMMUG000000064897 retrocopies
Monodelphis domestica ENSMODG000000061588 retrocopies
Mustela putorius furoENSMPUG000000151584 retrocopies
Mus musculus ENSMUSG000000222853 retrocopies
Nomascus leucogenys ENSNLEG000000032207 retrocopies
Oryctolagus cuniculus ENSOCUG000000007342 retrocopies
Ochotona princeps ENSOPRG000000002763 retrocopies
Procavia capensis ENSPCAG000000107441 retrocopy
Pongo abelii ENSPPYG000000187917 retrocopies
Pelodiscus sinensis ENSPSIG000000037031 retrocopy
Pteropus vampyrus ENSPVAG000000166411 retrocopy
Sarcophilus harrisii ENSSHAG000000126712 retrocopies
Sus scrofa ENSSSCG000000060622 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000238643 retrocopies
Taeniopygia guttata ENSTGUG000000120781 retrocopy
Tarsius syrichta ENSTSYG0000000615010 retrocopies
Tursiops truncatus ENSTTRG000000159064 retrocopies
Vicugna pacos ENSVPAG000000058651 retrocopy



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