RetrogeneDB ID: | retro_dnov_1007 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_133804:4284..4663(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | YWHAZ | ||
| Ensembl ID: | ENSDNOG00000001672 | ||
| Aliases: | None | ||
| Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Retrocopy-Parental alignment summary:
>retro_dnov_1007
GTGCCTCACAAGCAGAGAGCAAAGTCTTTGAAAATGAAAGGAAACTACTATCATTACTTGGCTGAGGTTGCTGCTGGTGA
TGACAAGAAAGGGATTGTGGATCAGTCGCAACAAGCATACCAAGAAGCATTTGAAATCAGCAAAAAGGAAATGCAACCAA
TGCATCCTATAAGATTGGTCTGGCCCTTAACTTTTCTGTGTTCTATTATGAGATTCTGAACTCCCTGGAGAAAGCCTGCT
CTCTTGCAAAGACAGCTTTTGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCATACAAAGACAGCACACTA
ATAATGCAATTACTGAGAGAGAACTTGACGTTGTGGACATCAATACCCAAGGAGATGAA
ORF - retro_dnov_1007 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.47 % |
| Parental protein coverage: | 94.93 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | IPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRL-GLALNF |
| .P....A.S....LKMKG.YY.YLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQP.HPIRL.GLALNF | |
| Retrocopy | VPHKQRAKS----LKMKGNYYHYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPMHPIRL<GLALNF |
| Parental | SVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS-DTQGDE |
| SVFYYEILNS.EKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLR.NLTLWTS..TQGDE | |
| Retrocopy | SVFYYEILNSLEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRENLTLWTS<NTQGDE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .39 RPM | 62 .04 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 53 .48 RPM |
| SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
| SRP012922_kidney | 0 .00 RPM | 11 .50 RPM |
| SRP012922_liver | 0 .00 RPM | 8 .82 RPM |
| SRP012922_lung | 0 .15 RPM | 30 .39 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 3 .46 RPM |
| SRP012922_spleen | 0 .11 RPM | 44 .53 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1007 was not experimentally validated.