RetrogeneDB ID: | retro_cjac_31 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 7:60956634..60957381(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000021981 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000015844 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.85 % |
Parental protein coverage: | 96.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT- |
M....L.QKAKLAEQAERY.DMAA.MK...E.G.ELS.EERNLLSVAYKNVVG..R..WRV.SSIEQK.. | |
Retrocopy | MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSN |
Parental | -EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
.EG.E.K.....EYREK.ETELR..C..VL.LL...LI.....AES.VFYLKMKGDYYRYLAEVA.GDDK | |
Retrocopy | EEGSEEKGPEVHEYREKVETELRGVCDTVLGLLDRHLIQESGDAESRVFYLKMKGDYYRYLAEVATGDDK |
Parental | KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSE |
K.I.D....AYQEA..ISKKEM.PT.PIRLGLALNFSVF.YEI.NSPE.A.SLAKT.FDEA.A.L.TLSE | |
Retrocopy | KRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSE |
Parental | ESYKDSTLIMQLLRDNLTLWTSDTQGDE |
.SYKDSTLIMQLLRDNLTLWT.D..G.E | |
Retrocopy | DSYKDSTLIMQLLRDNLTLWTADNAGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 5 .17 RPM | 193 .12 RPM |
SRP051959_heart | 0 .00 RPM | 83 .65 RPM |
SRP051959_kidney | 0 .11 RPM | 95 .67 RPM |
SRP051959_liver | 0 .00 RPM | 35 .35 RPM |
SRP051959_lung | 0 .10 RPM | 127 .44 RPM |
SRP051959_lymph_node | 0 .09 RPM | 172 .46 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 32 .15 RPM |
SRP051959_spleen | 0 .04 RPM | 136 .22 RPM |