RetrogeneDB ID: | retro_pabe_556 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:104770817..104771431(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSPPYG00000018791 | ||
Aliases: | None | ||
Description: | 14-3-3 protein zeta/delta [Source:UniProtKB/Swiss-Prot;Acc:Q5R651] |
Percent Identity: | 87.86 % |
Parental protein coverage: | 83.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS |
RNLLSVAYKNVVGARRSSWRV..SIEQKTEGAEKKQQ.AREYREKIE.ELRDI.NDVLSLLEKFLI..AS | |
Retrocopy | RNLLSVAYKNVVGARRSSWRVILSIEQKTEGAEKKQQIAREYREKIEIELRDISNDVLSLLEKFLISSAS |
Parental | QAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFS-VFYY |
QAESKVF.LKMKGDYY.YLAEVAAGD.KK..V.QSQQAYQEAFEISKKEMQPTH..RLGLAL.FS..FYY | |
Retrocopy | QAESKVFCLKMKGDYYHYLAEVAAGDGKKRTVGQSQQAYQEAFEISKKEMQPTHTVRLGLALSFS<LFYY |
Parental | EILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
EILNSP.K.CSLAK.AFDEAIAELDTLSEESYKDSTLIMQL.RDNLTLWT.DTQGD.AEAGE.GEN | |
Retrocopy | EILNSPDKVCSLAKMAFDEAIAELDTLSEESYKDSTLIMQLPRDNLTLWTLDTQGDKAEAGERGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .17 RPM | 235 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 146 .41 RPM |
SRP007412_heart | 0 .00 RPM | 38 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 57 .84 RPM |
SRP007412_liver | 0 .00 RPM | 37 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_2422 |