RetrogeneDB ID: | retro_cjac_881 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:115566518..115567015(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000015844 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.47 % |
Parental protein coverage: | 69.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | EERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPN |
.ERN..SV.YK.VVG..RSS.RVVSSIEQKTE...KK..MA..YREKIE.ELR.I..DVLSL........ | |
Retrocopy | KERNRPSVSYKIVVGVCRSSCRVVSSIEQKTEVLRKK*-MAPAYREKIERELRGIYSDVLSLGKVLDPMH |
Parental | ASQAESKVFYLKMKGDYYRYLA-EVAAGDDKK-GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV |
AS.AESK...LKM..DYY..LA.EVAAG.D.K..IVDQSQQAYQ.A.EI.KKEMQPT.PIR.GLALN.SV | |
Retrocopy | ASEAESKIC-LKMR-DYYCCLA>EVAAG-DDK<DIVDQSQQAYQ*ACEITKKEMQPTNPIRSGLALNVSV |
Parental | FYYEILNSPEKACSLAKTA-FDEAIAELDTLSE |
FYYE.LNS.EK..S..K.A.F.EA..ELDTLS. | |
Retrocopy | FYYELLNSSEKSRSPVKAA<FGEALVELDTLSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 193 .12 RPM |
SRP051959_heart | 0 .00 RPM | 83 .65 RPM |
SRP051959_kidney | 0 .00 RPM | 95 .67 RPM |
SRP051959_liver | 0 .04 RPM | 35 .35 RPM |
SRP051959_lung | 0 .00 RPM | 127 .44 RPM |
SRP051959_lymph_node | 0 .00 RPM | 172 .46 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 32 .15 RPM |
SRP051959_spleen | 0 .00 RPM | 136 .22 RPM |