RetrogeneDB ID: | retro_ocun_1091 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:37760177..37760614(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000000734 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.84 % |
Parental protein coverage: | 59.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRL |
SLLEKFLIPNASQAESKV.YLKM..DY.RYLA.VAAGDDK.G.V.Q.QQAY.EAFEISKKEMQPTHPIRL | |
Retrocopy | SLLEKFLIPNASQAESKVLYLKMQADY*RYLAGVAAGDDK-GTVGQPQQAYHEAFEISKKEMQPTHPIRL |
Parental | GL-ALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA |
GL.ALNFSVFY.E.LNSPEKACSL.KTAF.EAIAE.D..SEESYKDSTLIMQLLRDNLTLWTSDTQGDEA | |
Retrocopy | GL<ALNFSVFY*ESLNSPEKACSLEKTAFEEAIAEPDASSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA |
Parental | EAGEGGEN |
EAGEGGEN | |
Retrocopy | EAGEGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .33 RPM | 541 .89 RPM |
SRP017611_kidney | 0 .10 RPM | 157 .00 RPM |
SRP017611_liver | 0 .00 RPM | 26 .98 RPM |