RetrogeneDB ID: | retro_dnov_1579 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_239017:390..745(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSDNOG00000001672 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 60.48 % |
Parental protein coverage: | 88.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKK-EMQ-PTHPIRLGLALNFSVFYYE |
ESKVF.LKMKG.Y..YL..VA.G.D.K...D.......EAF..SKK.EM....H.I.L.L.LN..VF.YE | |
Retrocopy | ESKVFHLKMKGEYFQYLPKVASGND*K*TIDN---CHGEAFDTSKK<EME<TSHSIHLRLTLNYFVFSYE |
Parental | ILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQG |
ILN.PE.AC.L.K.AFDEAIAE.DTL.E.SYK.STLI.Q.LRD...LWTSD..G | |
Retrocopy | ILNNPEVACMLVKMAFDEAIAEFDTLNEDSYKESTLILQ*LRDKSALWTSDSAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 62 .04 RPM |
SRP012922_cerebellum | 0 .00 RPM | 53 .48 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 11 .50 RPM |
SRP012922_liver | 0 .00 RPM | 8 .82 RPM |
SRP012922_lung | 0 .00 RPM | 30 .39 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .46 RPM |
SRP012922_spleen | 0 .00 RPM | 44 .53 RPM |