RetrogeneDB ID: | retro_dnov_892 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_11876:41817..42220(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSDNOG00000001672 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 74.29 % |
Parental protein coverage: | 98.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | LEKFLIPNASQAESKV-FYLKMKGDYYRYLAE-VAAGDDKKGIVDQSQQAYQEAFEI-SKKEMQPTHPIR |
LEKF.I..AS.A.S.V..YLKMKGDYY.YLA...A...DK..IVDQSQQA.QEA.E...K.EM.PT.PIR | |
Retrocopy | LEKFWILTASLADSEV<LYLKMKGDYYPYLAD>AAGDEDKR-IVDQSQQAFQEAYET<QKNEM*PTQPIR |
Parental | LGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDT-LSEESYKDSTLIMQLLRDNLTLWTSDTQGDE |
LGLA..FSVFYYEILNS.EKACSLAKTAFDEA.AELD..LSEESY.DS.LI.QLLRDNLTL.T.DTQGDE | |
Retrocopy | LGLAFTFSVFYYEILNSLEKACSLAKTAFDEALAELDN<LSEESYQDSMLITQLLRDNLTL*TLDTQGDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 62 .04 RPM |
SRP012922_cerebellum | 0 .27 RPM | 53 .48 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 11 .50 RPM |
SRP012922_liver | 0 .00 RPM | 8 .82 RPM |
SRP012922_lung | 0 .00 RPM | 30 .39 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .46 RPM |
SRP012922_spleen | 0 .00 RPM | 44 .53 RPM |