RetrogeneDB ID: | retro_fcat_1697 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:63188773..63189402(+) | ||
Located in intron of: | ENSFCAG00000003337 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSFCAG00000032017 | ||
Aliases: | None | ||
Description: | Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta polypeptide [Source:UniProtKB/TrEMBL;Acc:A8D084] |
Percent Identity: | 88.63 % |
Parental protein coverage: | 83.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQ-QMAREYREKIETELRDICNDVLSLLEKF |
LS.EERN.LSVAYKNVVGARRSSWRVVSSIEQKTEGAEKK..Q.AREYREKIETEL.DI.ND.LSLLEKF | |
Retrocopy | LSKEERNRLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKH<QTAREYREKIETELSDIRNDALSLLEKF |
Parental | LIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNF |
LIP.ASQAESKVFYLKMKGD...YLAEVAAGDDKKG.VDQSQQA..EAFEIS.KEMQPTHPIRLGLAL.F | |
Retrocopy | LIPSASQAESKVFYLKMKGDCCPYLAEVAAGDDKKGTVDQSQQACEEAFEISEKEMQPTHPIRLGLALDF |
Parental | SVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGE |
SVFY.EILNSPEKACSLA.TAFDEA.AELDTLSEESY.DST.IMQLLRDNLT.WTSDTQ.DEAEAGEGGE | |
Retrocopy | SVFYSEILNSPEKACSLAETAFDEATAELDTLSEESYEDSTPIMQLLRDNLTSWTSDTQRDEAEAGEGGE |
Parental | N |
N | |
Retrocopy | N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .49 RPM | 736 .95 RPM |
SRP017611_kidney | 0 .31 RPM | 163 .14 RPM |
SRP017611_liver | 0 .00 RPM | 50 .24 RPM |