RetrogeneDB ID: | retro_sscr_35 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:77758761..77759508(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000003562 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSSSCG00000006062 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.27 % |
Parental protein coverage: | 95.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT- |
M......QKAKLAEQAERY.DMAA.MKS..E.G.ELS.EERNLLSVAYKNVVG..R..WRV.SSIEQK.. | |
Retrocopy | MERASVIQKAKLAEQAERYEDMAAFMKSAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSN |
Parental | -EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
.EG.E.K....REYREK.E.ELR..C..VL.LL...LI..A..AES.VFYLKMKGDYYRYLAEVA.GDDK | |
Retrocopy | EEGSEEKGPEVREYREKVEKELRGVCDTVLGLLNTHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDK |
Parental | KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSE |
K.I.D....AYQEA..ISKKEM.PT.PIRLGLALNFSVF.YEI.NSPE.A.SLAKT.FDEA.A.L.TLSE | |
Retrocopy | KRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSE |
Parental | ESYKDSTLIMQLLRDNLTLWTSDTQGDE |
.SYKDSTLIMQLLRDNLTLWT.D..G.E | |
Retrocopy | DSYKDSTLIMQLLRDNLTLWTADNAGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 2313 .24 RPM | 174 .94 RPM |
SRP014902_testis | 0 .14 RPM | 168 .04 RPM |
SRP018288_heart | 0 .08 RPM | 99 .64 RPM |
SRP018288_kidney | 0 .20 RPM | 118 .31 RPM |
SRP018288_liver | 0 .00 RPM | 37 .10 RPM |
SRP018288_lung | 2 .75 RPM | 176 .57 RPM |
SRP018856_adipose | 0 .97 RPM | 262 .30 RPM |
SRP035408_brain | 0 .13 RPM | 508 .23 RPM |
SRP035408_liver | 0 .06 RPM | 68 .31 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
AJ660998 | 77758708 | 77759082 | 100 | 374 | 0 | 374 |
BG835435 | 77758701 | 77759107 | 100 | 405 | 0 | 404 |
EW157942 | 77758909 | 77759205 | 100 | 296 | 0 | 296 |
EW440938 | 77758711 | 77759040 | 100 | 328 | 0 | 327 |
EW440954 | 77758802 | 77759101 | 100 | 299 | 0 | 299 |
EW443386 | 77758703 | 77759057 | 100 | 354 | 0 | 354 |
EW445586 | 77758788 | 77759043 | 100 | 255 | 0 | 255 |
EW651198 | 77759090 | 77759315 | 100 | 225 | 0 | 225 |
EW652725 | 77758930 | 77759085 | 98.1 | 155 | 0 | 154 |