RetrogeneDB ID: | retro_ggor_1754 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:13475709..13476448(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000025230 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSGGOG00000022133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PVMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQK |
PV.DKNELVQKAKLAEQAE.YDDMAACMKSVT.QGAELSNEERNL.SVAYKNVVGARRSSWRVVSSIEQK | |
Retrocopy | PVTDKNELVQKAKLAEQAEQYDDMAACMKSVTKQGAELSNEERNLPSVAYKNVVGARRSSWRVVSSIEQK |
Parental | TEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
TEGAEKKQQMAREYRE.IETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYL.EV.AGDDK | |
Retrocopy | TEGAEKKQQMAREYREEIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLTEVTAGDDK |
Parental | KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV-FYYEILNSPEKACSLAKTAFDEAIAELDTLS |
KGIVDQSQQAYQEAFEISKKEMQPTHP.RLGLALNF.V..Y.EILNSPEKAC.LAKTAFDEAIAELDTLS | |
Retrocopy | KGIVDQSQQAYQEAFEISKKEMQPTHPVRLGLALNFCV>YY-EILNSPEKACCLAKTAFDEAIAELDTLS |
Parental | EESYKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
EESYKDS.LIMQLLRDNLTLWTSDTQGDE.EAGEGGE. | |
Retrocopy | EESYKDSMLIMQLLRDNLTLWTSDTQGDEVEAGEGGES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 142 .38 RPM |
SRP007412_cerebellum | 0 .04 RPM | 46 .69 RPM |
SRP007412_heart | 0 .00 RPM | 7 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 46 .49 RPM |
SRP007412_liver | 0 .03 RPM | 20 .34 RPM |
SRP007412_testis | 0 .00 RPM | 87 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1686 |
Pongo abelii | retro_pabe_2047 |