RetrogeneDB ID: | retro_ggor_211 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:27809439..27810186(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000011493 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSGGOG00000022133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.27 % |
Parental protein coverage: | 95.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT- |
M....L.QKAKLAEQAERY.DMAA.MK...E.G.ELS.EERNLLSVAYKNVVG..R..WRV.SSIEQK.. | |
Retrocopy | MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSN |
Parental | -EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
.EG.E.K....REYREK.ETEL...C..VL.LL...LI..A..AES.VFYLKMKGDYYRYLAEVA.GDDK | |
Retrocopy | EEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDK |
Parental | KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSE |
K.I.D....AYQEA..ISKKEM.PT.PIRLGLALNFSVF.YEI.NSPE.A.SLAKT.FDEA.A.L.TLSE | |
Retrocopy | KRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSE |
Parental | ESYKDSTLIMQLLRDNLTLWTSDTQGDE |
.SYKDSTLIMQLLRDNLTLWT.D..G.E | |
Retrocopy | DSYKDSTLIMQLLRDNLTLWTADNAGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .48 RPM | 142 .38 RPM |
SRP007412_cerebellum | 0 .47 RPM | 46 .69 RPM |
SRP007412_heart | 0 .09 RPM | 7 .79 RPM |
SRP007412_kidney | 0 .49 RPM | 46 .49 RPM |
SRP007412_liver | 0 .16 RPM | 20 .34 RPM |
SRP007412_testis | 0 .00 RPM | 87 .44 RPM |