RetrogeneDB ID: | retro_acar_25 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343488.1:150470..151211(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000016687 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSACAG00000008694 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
M..N..VQKAKLAEQAERY.DMA..MK.V.E.G.ELSNEERNLLSVAYKNVVG..RS.WRV.SSIE.KTE | |
Retrocopy | MARNHQVQKAKLAEQAERYEDMADFMKAVVEDGSELSNEERNLLSVAYKNVVGCQRSAWRVISSIEHKTE |
Parental | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG |
....K.Q...EYREKIE.EL...CN.VL.LL.K.LIP.A..AESKVFYLKMKGDY.RYLAEVAAGDD.K. | |
Retrocopy | EGDDKAQLVNEYREKIEKELKNVCNVVLGLLDKHLIPKAGDAESKVFYLKMKGDYFRYLAEVAAGDDRKQ |
Parental | IVEQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES |
I......AYQEA..ISKKEMQPT.PIRLGLALNFSVF.YEI.N.PE.A..LAKT.FDEA...L.TLSE.S | |
Retrocopy | IIDNARKAYQEAMDISKKEMQPTNPIRLGLALNFSVFHYEIANAPEDAIKLAKTTFDEAMGDLHTLSEDS |
Parental | YKDSTLIMQLLRDNLTLWTSDTQGDE-AEAGEGGEN |
YKDSTLIMQLLRDNLTLWT....G.E..EAGE...N | |
Retrocopy | YKDSTLIMQLLRDNLTLWTAECSGEEGGEAGEEPKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .26 RPM | 753 .66 RPM |
SRP009831_brain | 0 .71 RPM | 2208 .32 RPM |
SRP009831_dewlap | 90 .28 RPM | 380 .69 RPM |
SRP009831_embryo | 2 .13 RPM | 1019 .88 RPM |
SRP009831_heart | 3 .99 RPM | 244 .94 RPM |
SRP009831_liver | 0 .49 RPM | 381 .58 RPM |
SRP009831_lung | 4 .94 RPM | 273 .47 RPM |
SRP009831_ovary | 2 .66 RPM | 321 .22 RPM |
SRP009831_skeletal_muscle | 1 .89 RPM | 41 .99 RPM |