RetrogeneDB ID: | retro_pabe_89 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:24102680..24103415(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000002149 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSPPYG00000018791 | ||
Aliases: | None | ||
Description: | 14-3-3 protein zeta/delta [Source:UniProtKB/Swiss-Prot;Acc:Q5R651] |
Percent Identity: | 96.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSS.EQKTE | |
Retrocopy | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSTEQKTE |
Parental | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG |
GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFY.KMKGDYYRYLAEVAAGDDKKG | |
Retrocopy | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYFKMKGDYYRYLAEVAAGDDKKG |
Parental | IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES |
IVDQSQQAYQEAFEISKKEMQPTHP.R.GLALNFSVFY.EILNSPEKACSLAKTAFDEAIAELDTLSEES | |
Retrocopy | IVDQSQQAYQEAFEISKKEMQPTHPLRVGLALNFSVFYHEILNSPEKACSLAKTAFDEAIAELDTLSEES |
Parental | YKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEGGEN |
.KDSTLIMQLL.DNLT.WTSDTQGDEAEAGEGGEN | |
Retrocopy | SKDSTLIMQLLSDNLTVWTSDTQGDEAEAGEGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 235 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 146 .41 RPM |
SRP007412_heart | 0 .00 RPM | 38 .65 RPM |
SRP007412_kidney | 0 .03 RPM | 57 .84 RPM |
SRP007412_liver | 0 .00 RPM | 37 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_549 |
Pan troglodytes | retro_ptro_412 |
Gorilla gorilla | retro_ggor_499 |