RetrogeneDB ID: | retro_cfam_1521 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 33:14833928..14834380(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSCAFG00000000580 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 85.26 % |
Parental protein coverage: | 63.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKE |
L.DICNDVL.LLEKF..P..SQAESK.FYLK.KGDYY.YLAEVAAGD.KK.IVDQSQQAYQEAFEI.KKE | |
Retrocopy | LGDICNDVLCLLEKF*SP--SQAESKIFYLKTKGDYYCYLAEVAAGDGKKRIVDQSQQAYQEAFEI-KKE |
Parental | MQPTHPIRLGLALNFSVFY-YEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLW |
MQPTHPIRLGLALNF.VFY..EILNSP.KACSLAKT.FDE.IAELDTL..ESYKDSTLIMQLLRDNLTLW | |
Retrocopy | MQPTHPIRLGLALNFTVFY<FEILNSPKKACSLAKTVFDETIAELDTLI*ESYKDSTLIMQLLRDNLTLW |
Parental | TSDTQGDEAEAGEGGE |
TSDTQGD.AEA.EGG. | |
Retrocopy | TSDTQGDKAEA-EGGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 101 .18 RPM |
SRP017611_brain | 0 .00 RPM | 88 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 50 .85 RPM |
SRP017611_liver | 0 .00 RPM | 4 .13 RPM |