RetrogeneDB ID: | retro_acar_44 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 2:118187472..118188219(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000010142 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSACAG00000008694 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.03 % |
Parental protein coverage: | 97.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KNELVQKAKLAEQAERYDDMAACMKSVTEQGAE-LSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEG |
...LVQ.A.LAEQ..RY.DMAA.M......G.E.L..EE..LLS.AY..V.....SSWR..........G | |
Retrocopy | RKQLVQQAQLAEQCGRYKDMAAAMRQLVAEGGEPLTQEEKTLLSKAYTFVIQELCSSWRRLKNSVEQGVG |
Parental | AEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAE--SKVFYLKMKGDYYRYLAEVAAGDDKK |
.EK.Q..A..YRE.I..EL...C...L.LL...L..........S..FYLKMKGD.YRYLAEVA..D.K. | |
Retrocopy | KEKEQ--AEAYRETIKRELETQCLEILGLLDHGLLKHCHETDKGSRAFYLKMKGDNYRYLAEVAQSDTKD |
Parental | GIVEQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEE |
..V....QAY.EA.EIS.....PTHP..L..ALN.SV..YE.LN..EKA..LAK.AFD.AIA.L.TLS.E | |
Retrocopy | MLVKSAVQAYEEAQEISERHLEPTHPLALAVALNHSVLHYEVLNNAEKATKLAKAAFDKAIAGLETLSLE |
Parental | SYKDSTLIMQLLRDNLTLWTSDTQGDEAEAGEG |
.YK.ST.IMQ.LRDN...WTSD.Q..E.E...G | |
Retrocopy | FYKESTVIMQRLRDNIVQWTSD-QHEEVETNSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .26 RPM | 753 .66 RPM |
SRP009831_brain | 0 .05 RPM | 2208 .32 RPM |
SRP009831_dewlap | 0 .13 RPM | 380 .69 RPM |
SRP009831_embryo | 0 .44 RPM | 1019 .88 RPM |
SRP009831_heart | 0 .88 RPM | 244 .94 RPM |
SRP009831_liver | 0 .16 RPM | 381 .58 RPM |
SRP009831_lung | 0 .76 RPM | 273 .47 RPM |
SRP009831_ovary | 0 .15 RPM | 321 .22 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 41 .99 RPM |