RetrogeneDB ID: | retro_dnov_1993 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_41036:12845..13165(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSDNOG00000001672 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 67.59 % |
Parental protein coverage: | 76.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPE-KACSLAKTAFDEAI |
.A.GD..K...D.SQ.AYQEAF..SKKEMQPTHPI.LGLA.NFSVFY.EILN.PE...C.LA..A.DEAI | |
Retrocopy | MACGDYRKQMIDHSQIAYQEAFDMSKKEMQPTHPICLGLAFNFSVFYPEILNNPE<DSCTLAEMASDEAI |
Parental | AELDTLSEESYKDSTLIMQLLR--DNLTLWTSDTQGDE |
.EL.TL.E.SYKDSTLI.Q.LR..D.LTLW.SD..G.E | |
Retrocopy | TELNTLNEDSYKDSTLIVQVLRCKDTLTLWKSDSAGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 62 .04 RPM |
SRP012922_cerebellum | 0 .00 RPM | 53 .48 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 11 .50 RPM |
SRP012922_liver | 0 .00 RPM | 8 .82 RPM |
SRP012922_lung | 0 .00 RPM | 30 .39 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .46 RPM |
SRP012922_spleen | 0 .00 RPM | 44 .53 RPM |