RetrogeneDB ID: | retro_ocun_248 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:138502951..138503698(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000006405 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000000734 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.43 % |
Parental protein coverage: | 95.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT- |
M....L.QKAKLAEQAERY.DMAA.MK...E.G.ELS.EERNLLSVAYKNVVG..R..WRV.SSIEQK.. | |
Retrocopy | MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKST |
Parental | -EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
.EG.E.K....REYRE..E.ELR..C..VL.LL...LI..A..AES.VFYLKMKGDYYRYLAEVA.GDDK | |
Retrocopy | EEGSEEKGPEVREYRERVEKELRGVCDAVLGLLDSHLIKEAGEAESRVFYLKMKGDYYRYLAEVATGDDK |
Parental | KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSE |
K.I.D....AYQEA..ISKKEM.PT.PIRLGLALNFSVF.YEI.NSPE.A..LAKT.FDEA.A.L.TLSE | |
Retrocopy | KRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAITLAKTTFDEAMADLHTLSE |
Parental | ESYKDSTLIMQLLRDNLTLWTSDTQGDE |
.SYKDSTLIMQLLRDNLTLWT.D..G.E | |
Retrocopy | DSYKDSTLIMQLLRDNLTLWTADNAGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 541 .89 RPM |
SRP017611_kidney | 1 .93 RPM | 157 .00 RPM |
SRP017611_liver | 0 .00 RPM | 26 .98 RPM |