RetrogeneDB - Parental gene ENSGGOG00000022133 details

Parental gene:	YWHAZ, ENSGGOG00000022133
Aliases:	None
Description:	None
Organism:	*Gorilla (Gorilla gorilla)*
Coordinates:	8:100083254..100118501(-)

							
>ENSGGOG00000022133
CCAGTCATGGATAAAAATGAGCTGGTTCAGAAGGCCAAACTGGCCGAGCAGGCTGAGCGATATGATGACATGGCAGCCTG

CATGAAGTCTGTAACTGAGCAAGGAGCTGAATTATCCAATGAGGAGAGGAATCTTCTCTCAGTTGCTTATAAAAATGTTG

TAGGAGCCCGTAGGTCATCTTGGAGGGTCGTCTCAAGTATTGAACAAAAGACGGAAGGTGCTGAGAAAAAACAGCAGATG

GCTCGAGAATACAGAGAGAAAATTGAGACGGAGCTAAGAGATATCTGCAATGATGTACTGTCTCTTTTGGAAAAGTTCTT

GATCCCCAATGCTTCACAAGCAGAGAGCAAAGTCTTCTATTTGAAAATGAAAGGAGATTACTACCGTTACTTGGCTGAGG

TTGCCGCTGGTGATGACAAGAAAGGGATTGTGGATCAGTCACAACAAGCATACCAAGAAGCTTTTGAAATCAGCAAAAAG

GAAATGCAACCAACACATCCTATCAGACTGGGTCTGGCCCTTAACTTCTCTGTGTTCTATTATGAGATTCTGAACTCCCC

AGAGAAAGCCTGCTCTCTTGCAAAGACAGCTTTTGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCATACA

AAGACAGCACGCTAATAATGCAATTACTGAGAGACAACTTGACATTGTGGACATCGGATACCCAAGGAGACGAAGCTGAA

GCAGGAGAAGGAGGGGAAAATTAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	142 .38 RPM
SRP007412_cerebellum	46 .69 RPM
SRP007412_heart	7 .79 RPM
SRP007412_kidney	46 .49 RPM
SRP007412_liver	20 .34 RPM
SRP007412_testis	87 .44 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000008694	ortholog_one2many	2 retrogenes	retro_acar_25, retro_acar_44,
Ailuropoda melanoleuca	ENSAMEG00000000328	possible_ortholog	1 retrogene	retro_amel_562,
Bos taurus	ENSBTAG00000000236	possible_ortholog	4 retrogenes	retro_btau_1482, retro_btau_635, retro_btau_68, retro_btau_910,
Canis familiaris	ENSCAFG00000000580	possible_ortholog	6 retrogenes	retro_cfam_1302, retro_cfam_1521, retro_cfam_158, retro_cfam_1840, retro_cfam_233, retro_cfam_465,
Choloepus hoffmanni	ENSCHOG00000002798	ortholog_one2one	9 retrogenes	retro_chof_1572, retro_chof_1703, retro_chof_1890, retro_chof_2321, retro_chof_2346, retro_chof_2669, retro_chof_292, retro_chof_315, retro_chof_933,
Callithrix jacchus	ENSCJAG00000015844	ortholog_one2one	5 retrogenes	retro_cjac_1769, retro_cjac_2164, retro_cjac_3000, retro_cjac_31, retro_cjac_881,
Cavia porcellus	ENSCPOG00000020285	ortholog_one2one	5 retrogenes	retro_cpor_220, retro_cpor_323, retro_cpor_434, retro_cpor_592, retro_cpor_644,
Dasypus novemcinctus	ENSDNOG00000001672	possible_ortholog	10 retrogenes	retro_dnov_1007, retro_dnov_117, retro_dnov_1354, retro_dnov_1579, retro_dnov_1769, retro_dnov_1907, retro_dnov_1993, retro_dnov_2588, retro_dnov_892, retro_dnov_99,
Equus caballus	ENSECAG00000021882	possible_ortholog	3 retrogenes	retro_ecab_202, retro_ecab_31, retro_ecab_624,
Ficedula albicollis	ENSFALG00000005860	ortholog_one2many	1 retrogene	retro_falb_13,
Felis catus	ENSFCAG00000032017	ortholog_one2one	4 retrogenes	retro_fcat_1563, retro_fcat_1631, retro_fcat_1697, retro_fcat_60,
Homo sapiens	ENSG00000164924	possible_ortholog	1 retrogene	retro_hsap_549,
Gallus gallus	ENSGALG00000010725	ortholog_one2many	1 retrogene	retro_ggal_3,
Gorilla gorilla	ENSGGOG00000001569	within_species_paralog	1 retrogene	retro_ggor_2081,
Gorilla gorilla	ENSGGOG00000004580	within_species_paralog	2 retrogenes	retro_ggor_2795, retro_ggor_699,
Gorilla gorilla	ENSGGOG00000016840	other_paralog	1 retrogene	retro_ggor_2596,
Loxodonta africana	ENSLAFG00000004944	ortholog_one2one	2 retrogenes	retro_lafr_1089, retro_lafr_112,
Myotis lucifugus	ENSMLUG00000017323	ortholog_one2one	3 retrogenes	retro_mluc_1617, retro_mluc_1686, retro_mluc_296,
Macaca mulatta	ENSMMUG00000006489	ortholog_one2one	7 retrogenes	retro_mmul_1859, retro_mmul_1883, retro_mmul_2136, retro_mmul_2247, retro_mmul_2422, retro_mmul_2503, retro_mmul_451,
Monodelphis domestica	ENSMODG00000006158	possible_ortholog	8 retrogenes	retro_mdom_1589, retro_mdom_1664, retro_mdom_1763, retro_mdom_1815, retro_mdom_1875, retro_mdom_1958, retro_mdom_255, retro_mdom_446,
Mustela putorius furo	ENSMPUG00000015158	possible_ortholog	4 retrogenes	retro_mputfur_1000, retro_mputfur_239, retro_mputfur_7, retro_mputfur_864,
Mus musculus	ENSMUSG00000022285	ortholog_one2many	3 retrogenes	retro_mmus_163, retro_mmus_2187, retro_mmus_744,
Nomascus leucogenys	ENSNLEG00000003220	possible_ortholog	7 retrogenes	retro_nleu_1368, retro_nleu_1426, retro_nleu_2186, retro_nleu_23, retro_nleu_449, retro_nleu_487, retro_nleu_722,
Oryctolagus cuniculus	ENSOCUG00000000734	ortholog_one2many	2 retrogenes	retro_ocun_1091, retro_ocun_248,
Ochotona princeps	ENSOPRG00000000276	possible_ortholog	3 retrogenes	retro_opri_1218, retro_opri_218, retro_opri_967,
Procavia capensis	ENSPCAG00000010744	possible_ortholog	1 retrogene	retro_pcap_170,
Pongo abelii	ENSPPYG00000018791	possible_ortholog	7 retrogenes	retro_pabe_103, retro_pabe_1242, retro_pabe_2047, retro_pabe_3417, retro_pabe_3740, retro_pabe_556, retro_pabe_89,
Pelodiscus sinensis	ENSPSIG00000003703	ortholog_one2many	1 retrogene	retro_psin_13,
Pteropus vampyrus	ENSPVAG00000016641	possible_ortholog	1 retrogene	retro_pvam_1101,
Sarcophilus harrisii	ENSSHAG00000012671	possible_ortholog	2 retrogenes	retro_shar_126, retro_shar_409,
Sus scrofa	ENSSSCG00000006062	ortholog_one2one	2 retrogenes	retro_sscr_222, retro_sscr_35,
Ictidomys tridecemlineatus	ENSSTOG00000023864	ortholog_one2one	3 retrogenes	retro_itri_162, retro_itri_483, retro_itri_887,
Taeniopygia guttata	ENSTGUG00000012078	ortholog_one2many	1 retrogene	retro_tgut_4,
Tarsius syrichta	ENSTSYG00000006150	possible_ortholog	10 retrogenes	retro_tsyr_1047, retro_tsyr_1075, retro_tsyr_1419, retro_tsyr_1941, retro_tsyr_2022, retro_tsyr_2066, retro_tsyr_2085, retro_tsyr_720, retro_tsyr_900, retro_tsyr_985,
Tursiops truncatus	ENSTTRG00000015906	ortholog_one2one	4 retrogenes	retro_ttru_15, retro_ttru_1540, retro_ttru_207, retro_ttru_455,
Vicugna pacos	ENSVPAG00000005865	ortholog_one2one	1 retrogene	retro_vpac_350,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ggor_211	72.27	95.55	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ggor_499	96.36	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ggor_544	89.52	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ggor_1092	74.27	67.61	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ggor_1754	93.55	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ggor_2379	88.64	70.45	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ggor_2997	96.36	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ggor_2998	95.14	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ggor_3020	85.27	51.42	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSGGOG00000022133 retrocopies

Parental gene:

YWHAZ, ENSGGOG00000022133