RetrogeneDB ID: | retro_ggor_1092 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 14:25583287..25583783(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSGGOG00000022133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.27 % |
Parental protein coverage: | 67.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | ERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEK-KQQMAREYREKIETELRDIC-NDVLSLLEKFLIP |
ERNLLSVAYKNV.GA.RSSW..VSSI.Q.TE.AEK.KQQMA.EYREK.E.ELR.IC.NDVLSLLE.FLIP | |
Retrocopy | ERNLLSVAYKNVTGACRSSWSFVSSIGQMTEAAEK<KQQMA*EYREKMESELRAIC>NDVLSLLEEFLIP |
Parental | NASQAESKVFYLKMK-GDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEI-SKKEMQPTHPIRLGLALNFS |
.ASQA.SK..Y.K.K.G.Y..YLA.VAA.DDKKGIVDQSQQA.QEAFEI..KKE.Q.THPIRLGL....S | |
Retrocopy | KASQAQSKI-Y*KQK<GGYFCYLAQVAASDDKKGIVDQSQQAHQEAFEI<QKKELQSTHPIRLGLGYKLS |
Parental | VFYYEILNSPEKACSLAKTAFDEAIAELDTL |
V.Y.E.LN..EKAC.LAKTAFDEAI..L.TL | |
Retrocopy | VLYCENLNFLEKACCLAKTAFDEAIVGLNTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 142 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 46 .69 RPM |
SRP007412_heart | 0 .00 RPM | 7 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 46 .49 RPM |
SRP007412_liver | 0 .00 RPM | 20 .34 RPM |
SRP007412_testis | 0 .00 RPM | 87 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_965 |