RetrogeneDB ID: | retro_tsyr_130 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_3519:34533..35424(-) | ||
Located in intron of: | ENSTSYG00000004436 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSTSYG00000009732 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 87.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGF |
QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGF | |
Retrocopy | QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGF |
Parental | VFTKEDLTEIRDMLLANKVPAAARAGAIAPCE-VTVP-AQNTGLGPEKTSFFQALGIT-TKISRGTIEIL |
VFTKEDLTEIRDMLLANKVP.AA......P.E.VTV..AQNTGLG..KTS.FQALGIT.TKISRGTIEIL | |
Retrocopy | VFTKEDLTEIRDMLLANKVP-AAARAVHCPME<VTVQ<AQNTGLGLRKTSVFQALGIT<TKISRGTIEIL |
Parental | SDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEDTLHSRFLEGVRNVASV |
SDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEDTLHSRFLEGVRNVASV | |
Retrocopy | SDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEDTLHSRFLEGVRNVASV |
Parental | CLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLAXXVKAFLADPSAFVAAAPVAAAAPAAPAALAAP |
CLQIGYPTVASVPH.IINGYKRVLAL.VETEYTFPLA..VKAFLADP.AF..................AP | |
Retrocopy | CLQIGYPTVASVPHFIINGYKRVLALFVETEYTFPLAEKVKAFLADPFAFXXXXXXXXXXXXXXXXXXAP |
Parental | AKVEAKEESEESDEDMGFGLFD |
AKVEAKEESEESDEDMGFGLFD | |
Retrocopy | AKVEAKEESEESDEDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |