RetrogeneDB ID: | retro_vpac_234 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3090:708895..709390(-) | ||
Located in intron of: | ENSVPAG00000007007 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSVPAG00000012156 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 69.01 % |
Parental protein coverage: | 51.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | VVLMGKNTMMR-KAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE |
V.L.GK......K.I.G.L.N.PALEKL.PHI.GNVGFVFTKEDLTEIRDM.LA.KVPAAA.AGA.A... | |
Retrocopy | VSLCGKGVVVAGKSI*GYLQNHPALEKLPPHIQGNVGFVFTKEDLTEIRDMMLAIKVPAAACAGAMALGK |
Parental | VTVPAQNTGLG-PEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNM-LNISPFS-FGL |
VT.P.QNTG.G.PEKT.FFQALGI....S.GT..IL.DVQLIK.GD..GASEATLL.....I.PFS..GL | |
Retrocopy | VTGPSQNTGPG<PEKTPFFQALGIIIELSKGTTDILNDVQLIKAGDQLGASEATLLSI<MHITPFS<LGL |
Parental | IIQQVFDN-GSIYNPEVL-DITEETLHSRFL |
I.QQV.DN.GSIYNPEVL.D.TEET.HS.FL | |
Retrocopy | ITQQVLDN>GSIYNPEVL<DVTEETVHSCFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |