RetrogeneDB ID: | retro_itri_1155 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393388.1:4115773..4116451(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSSTOG00000011327 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 94.25 % |
Parental protein coverage: | 71.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
MPREDRAT.KSNYFLKIIQLLDD.PKCFIVGADNVGSKQMQQI.MSL.GKA.VLMGKNTMMRKAIRGHLE | |
Retrocopy | MPREDRATCKSNYFLKIIQLLDDSPKCFIVGADNVGSKQMQQI*MSLQGKAMVLMGKNTMMRKAIRGHLE |
Parental | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA |
NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLL.NKV.AAARAGA.APCEVTVPAQNTGLGP.KTSFF.A | |
Retrocopy | NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLTNKVLAAARAGATAPCEVTVPAQNTGLGPKKTSFFPA |
Parental | LGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEET |
LG.TTKISRGTIEILSDV.LIKTGDKVGA.EATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEET | |
Retrocopy | LGTTTKISRGTIEILSDV*LIKTGDKVGAIEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEET |
Parental | LHSRFLEGVRNVASVC |
LHSRFLEGVRNVASVC | |
Retrocopy | LHSRFLEGVRNVASVC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |